Image Processing

A UNIX primer.

A Fortran f77 primer.
Wiki: Software Tools for Molecular Microscopy
Structural Biology Grid
MacResearch
SPIDER is good for single particles.
PyMol
Chimera UCSF's visualization program
IPLT Image Processing Library and Toolkit
XMIPP
Calidiris - Programs for Electron Microscopy and Electron Diffraction , maintained by Sven Hovmoeller, Stockholm University, Sweden
- CRISP - a Software Package for Crystallographic Image Processing of Electron Micrographs
- ELD - A Software Package for the Quantitative Evaluation of Electron Diffraction Patterns
EMD EM Dep database search
EMAN for Single Particle Analysis and Electron Micrograph Analysis.
IMOD for tomographic reconstructions, from the Boulder Laboratory for 3-D Electron Microscopy of Cells.
DeRosier's Helical Package
bsoft Bernard Heymann's Bsoft package
DINO is Ansgar Philippsen's great Visualization Program for Structural Biology
O
POVRAY
- Povray Manual
- old PVM POV Source
- PVMPOV Source
- PVM Source
FreeAlign is the program of Niko Grigorieff.
MRC programs (Richard Henderson).
- EMBL Documentation of MRC image treatment software
- EMBL Examples of MRC command procedures
- EMBL (Ralph Heinkel) MRC i/o library reference manual
- FTP source for the MRC-Software in the MRC-LMB in Cambridge.
CCP4 Macromolecular Crystallography, also used to display results of the MRC image treatment.
Semper
- Synoptics Ltd., 271 Cambridge Science Park, Milton Road, Cambridge CB4 4WE, UK,
  Tel. x44(0)1223 423223, FAX: x44(0)1223 420020, email: sales@synoptics.co.uk
- Rafal Dunin-Borkowski maintains Semper manuals, here.
SPECTRA (These links are outdated, they don't work any more.)
- NCMI is the National Center for Macromolecular Imaging at Baylor College of Medicine, Huston, Texas, USA.
- Download SPECTRA here.
Imagic 5
- Image Science Software GmbH
  Heilbronner Strasse 10
  D-10711 Berlin, Germany
  E.mail: michael@ImageScience.de
Tyson, a tool for 3D reconstruction of bio molecules.
The HOLE program
EMBL Software
- EMBL Virus Structure Resource
- EMBL Icos Software Page
- EMBL iTools a python program that is useful to create command scripts to run icosahedral programs
PHOELIX of
Michael Whittaker
Department of Cell Biology
The Scripps Research Institute
La Jolla, CA 92037
mike@scripps.edu.
CHIME Netscape Implement
- Download CHIME 2.0 Beta

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